2018

Di Lorenzo, G., Velho, R.V., Winter, D., Thelen, M., Ahmadi, S., Schweizer, M., De Pace, R., Cornils, K., Yorgan, T.A., Grüb, S. and Hermans-Borgmeyer, I., Schinke, T., Müller-Loennies, S., Braulke, T., Pohl, S. Lysosomal proteome and secretome analysis identifies missorted enzymes and their non-degraded substrates in mucolipidosis III mouse cells. Molecular & Cellular Proteomics in press.

Ahmadi, S., Winter, D. "Identification of Poly Ethylene Glycol (PEG) and PEG-based Detergents Using Peptide Search Engines". Analytical chemistry in press.

Course, M.M., Scott, A.I., Schoor, C., Hsieh, C.H., Papakyrikos, A.M., Winter, D., Cowan, T.M. and Wang, X., 2018. Phosphorylation of MCAD selectively rescues PINK1 deficiencies in behavior and metabolism. Molecular biology of the cell, pp.mbc-E18.

Dehghani, A., Godderz, M. and Winter, D., Tip-Based Fractionation of Batch-Enriched Phosphopeptides Facilitates Easy and Robust Phosphoproteome Analysis. Journal of Proteome Research 17:46-54.

Tsai, P.-I., Lin, C.-H., Hsieh, C.-H., Papakyrikos A.M., Kim M.J., Napolioni, V., Schoor, C., Couthouis, J., Wu, R.-M., Wszolek, Z.K., Winter, D., Greicius, M.D., Ross, O.A. and Wang, X. PINK1 Phosphorylates MIC60/Mitofilin to Control Structural Plasticity of Mitochondrial Crista Junctions. Molecular Cell, Epub ahead of print, doi: 10.1016/j.molcel.2018.01.026

Hardt, R., Winter, D., Gieselmann, V. and Eckhardt, M. Identification of progesterone receptor membrane component-1 as an interaction partner and possible regulator of fatty acid 2-hydroxylase. Biochemical Journal. Epub ahead of print, doi: 10.1042/bcj20170963

2017

Thelen, M., Winter, D., Markmann, S., Braulke, T., and Gieselmann, V. (2017) SILAC-based comparative proteomic analysis of lysosomes from mammalian cells using LC-MS MS. Methods in molecular biology (Clifton, N.J.) in press

Müller, T. and Winter, D. Systematic Evaluation of Protein Reduction and Alkylation Reveals Massive Unspecific Side Effects by Iodine-containing Reagents. Molecular & Cellular Proteomics 16:1173-1187.

Peng, B., Weintraub, S.T., Coman, C., Ponnaiyan, S., Sharma, R., Tews, B., Winter, D. and Ahrends, R. A Comprehensive High-Resolution Targeted Workflow for the Deep Profiling of Sphingolipids. Analytical Chemistry 89:12480-12487.

2016

Konopka, A., Winter, D., Konopka, W., Busto, M. E. D., Nunez, S., Goenaga-Infante, H., Fisicaro, P., and Lehmann, W. D. (2016) Sec-to-Cys selenoprotein - a novel type of recombinant, full-length selenoprotein standard for quantitative proteomics. Journal of Analytical Atomic Spectrometry 31, 1929-1938

Ditgen, D., Anandarajah, E. M., Hansmann, J., Winter, D., Schramm, G., Erttmann, K. D., Liebau, E., and Brattig, N. W. (2016) Multifunctional Thioredoxin-Like Protein from the Gastrointestinal Parasitic Nematodes Strongyloides ratti and Trichuris suis Affects Mucosal Homeostasis. Journal of Parasitology Research 2016, 17

Jalaei, J., Fazeli, M., Rajaian, H., Ghalehsoukhteh, S. L., Dehghani, A., and Winter, D. (2016) In vitro antihistamine-releasing activity of a peptide derived from wasp venom of Vespa orientalis. Asian Pacific Journal of Tropical Biomedicine 6, 259-264

2015

Winter, D., Dehghani, A., and Steen, H. (2015) Optimization of Cell Lysis and Protein Digestion Protocols for Protein Analysis by LC-MS/MS. Methods in molecular biology (Clifton, N.J.) 1295, 259-273

Shahraz, A., Kopatz, J., Mathy, R., Kappler, J., Winter, D., Kapoor, S., Schutza, V., Scheper, T., Gieselmann, V., and Neumann, H. (2015) Anti-inflammatory activity of low molecular weight polysialic acid on human macrophages. Scientific Reports 5

2014

Prabakaran, S., Hemberg, M., Chauhan, R., Winter, D., Tweedie-Cullen, R. Y., Dittrich, C., Hong, E., Gunawardena, J., Steen, H., Kreiman, G., and Steen, J. A. (2014) Quantitative profiling of peptides from RNAs classified as noncoding. Nature Communications 5

Singh, S.*, Winter, D.*, Kirchner, M.*, Chauchan, R.*, Ahmed, S., Ozlu, N., Tzur, A., Steen, J. A., and Steen, H. (2014) Co-regulation proteomics reveals substrates and mechanisms of APC/C-dependent degradation. EMBO Journal *shared first authorship

2013

Eichhorn, T., Winter, D., Buchele, B., Dirdjaja, N., Frank, M., Lehmann, W. D., Mertens, R., Krauth-Siegel, R. L., Simmet, T., Granzin, J., and Efferth, T. (2013) Molecular interaction of artemisinin with translationally controlled tumor protein (TCTP) of Plasmodium falciparum. Biochemical Pharmacology 85, 38-45

2012

Renard, B. Y., Xu, B., Kirchner, M., Zickmann, F., Winter, D., Korten, S., Brattig, N. W., Tzur, A., Hamprecht, F. A., and Steen, H. (2012) Overcoming Species Boundaries in Peptide Identification with Bayesian Information Criterion-driven Error-tolerant Peptide Search (BICEPS). Molecular & Cellular Proteomics 11

Singh, S. A., Winter, D., Bilimoria, P. M., Bonni, A., Steen, H., and Steen, J. A. (2012) FLEXIQinase, a mass spectrometry-based assay, to unveil multikinase mechanisms. Nature Methods 9, 504-U134

Weeraratne, S. D., Amani, V., Teider, N., Pierre-Francois, J., Winter, D., Kye, M. J., Sengupta, S., Archer, T., Remke, M., Bai, A. H. C., Warren, P., Pfister, S. M., Steen, J. A. J., Pomeroy, S. L., and Cho, Y. J. (2012) Pleiotropic effects of miR-183 similar to 96 similar to 182 converge to regulate cell survival, proliferation and migration in medulloblastoma. Acta Neuropathologica 123, 539-552

Winter, D., Hung, C. W., Jaskolla, T. W., Karas, M., and Lehmann, W. D. (2012) Enzyme-cleavable tandem peptides for quantitative studies in MS-based proteomics. PROTEOMICS 12, 3470-3474

2011

Seidler, J., Zinn, N., Haaf, E., Boehm, M. E., Winter, D., Schlosser, A., and Lehmann, W. D. (2011) Metal ion-mobilizing additives for comprehensive detection of femtomole amounts of phosphopeptides by reversed phase LC-MS. Amino Acids 41, 311-320

Wang, X., Winter, D., Ashrafi, G., Schlehe, J., Wong, Y. L., Selkoe, D., Rice, S., Steen, J., Lavoie, M. J., and Schwarz, T. L. (2011) PINK1 and Parkin Target Miro for Phosphorylation and Degradation to Arrest Mitochondrial Motility. Cell 147, 893-906

Winter, D., and Steen, H. (2011) Optimization of cell lysis and protein digestion protocols for the analysis of HeLa S3 cells by LC-MS/MS. PROTEOMICS 11, 4726-4730

2010

Winter, D., Seidler, J., Hahn, B., and Lehmann, W. D. (2010) Structural and Mechanistic Information on c (1) Ion Formation in Collision-Induced Fragmentation of Peptides. Journal of the American Society for Mass Spectrometry 21, 1814-1820

Winter, D., Seidler, J., Kugelstadt, D., Derrer, B., Kappes, B., and Lehmann, W. D. (2010) Minimally permutated peptide analogs as internal standards for relative and absolute quantification of peptides and proteins. PROTEOMICS 10, 1510-1514

Zinn, N., Winter, D., and Lehmann, W. D. (2010) Recombinant isotope labeled and selenium quantified proteins for absolute protein quantification. Analytical Chemistry 82, 2334-2340

2009

Brenner, D., Brechmann, M., Rohling, S., Tapernoux, M., Mock, T., Winter, D., Lehmann, W. D., Kiefer, F., Thome, M., Krammer, P. H., and Arnold, R. (2009) Phosphorylation of CARMA1 by HPK1 is critical for NF-kappa B activation in T cells. Proceedings of the National Academy of Sciences of the United States of America 106, 14508-14513

Renard, B. Y., Kirchner, M., Monigatti, F., Ivanov, A. R., Rappsilber, J., Winter, D., Steen, J. A. J., Hamprecht, F. A., and Steen, H. (2009) When less can yield more - Computational preprocessing of MS/MS spectra for peptide identification. PROTEOMICS 9, 4978-4984

Schilling, M., Maiwald, T., Hengl, S., Winter, D., Kreutz, C., Kolch, W., Lehmann, W. D., Timmer, J., and Klingmuller, U. (2009) Theoretical and experimental analysis links isoform-specific ERK signalling to cell fate decisions. Molecular Systems Biology 5, 334

Winter, D., Kugelstadt, D., Seidler, J., Kappes, B., and Lehmann, W. D. (2009) Protein phosphorylation influences proteolytic cleavage and kinase substrate properties exemplified by analysis of in vitro phosphorylated Plasmodium falciparum glideosome-associated protein 45 by nano-ultra performance liquid chromatography-tandem mass spectrometry. Analytical Biochemistry 393, 41-47

Winter, D., and Lehmann, W. D. (2009) Individual b (2) ion fragmentation profiles combined with AspN digestion improve N-terminal peptide sequencing. Analytical and Bioanalytical Chemistry 393, 1587-1591

Winter, D., and Lehmann, W. D. (2009) Sequencing of the thirteen structurally isomeric quartets of N-terminal dipeptide motifs in peptides by collision-induced dissociation. PROTEOMICS 9, 2076-2084

Winter, D., Pipkorn, R., and Lehmann, W. D. (2009) Separation of peptide isomers and conformers by ultra performance liquid chromatography. Journal of Separation Science 32, 1111-1119

Winter, D., Seidler, J., Ziv, Y., Shiloh, Y., and Lehmann, W. D. (2009) Citrate Boosts the Performance of Phosphopeptide Analysis by UPLC-ESI-MS/MS. Journal of Proteome Research 8, 418-424

Winter, D., Seidler, J., Ziv-Lehrman, S., Shiloh, Y., and Lehmann, W. D. (2009) Simultaneous Identification and Quantification of Proteins by Differential O-16/O-18 Labeling and UPLC-MS/MS Applied to Mouse Cerebellar Phosphoproteome Following Irradiation. Anticancer Research 29, 4949-4958

2008

Winter, D., Shiloh, Y., and Lehmann, W. D. (2008) Phosphopeptide Isomer Analysis by Ultra Performance Liquid Chromatography-Tandem Mass Spectrometry. American Laboratory On-Line June 2008, 21-24

2007

Kugelstadt, D., Winter, D., Pluckhahn, K., Lehmann, W. D., and Kappes, B. (2007) Raf kinase inhibitor protein affects activity of Plasmodium falciparum calcium-dependent protein kinase 1. Molecular and Biochemical Parasitology 151, 111-117

Patents:

Winter D, Lehmann WD, Minimal Permutated Analoga (MIPA) as internal Peptide Standards for Quantitative Proteomics. EU patent EP 07112749.2, US patent 12/669,406

JSN Decor template designed by JoomlaShine.com